Weka Segmentation: add double precision.
Weka Segmentation: added methods to calculate Rand index in 3D with N^2 normalization.
Merge branch 'trainable-seg-gui'
Fiji Build: delegate to ImageJ2's MiniMaven

This completes the move of MiniMaven to ImageJ2.

Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
Fix compiler warnings in Fiji Build

Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
Merge remote-tracking branch 'github/master'
Make sure that copy-jars in Fiji_Archipelago finds jai-codec

Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
Port Script Editor to use ImageJ2's MiniMaven, too

Somehow this change got lost before pushing the change to fake.jar.

Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
Build.sh: make sure that uploading via ssh will work

Recent architecture changes showed the problem (again, we had the
same problem with Fiji Build's missing-precompiled-fallback) with
relying on the update site: it will never be completely up-to-date.

In the case of Ignacio Arganda-Carreras (as reported as bug 575),
ij-updater-ssh was taken from the update site and did not match
ij-updater-core as taken from the Maven repository.

Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
Fix the version of Fiji_Archipelago's dependency mpicbg

Pointed out by Curtis Rueden.

Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
Remove the source for the Action Bar

It is developed elsewhere, as pointed out by:

	https://list.nih.gov/cgi-bin/wa.exe?A2=ind1303&L=IMAGEJ&F=&S=&P=83278

It is available from here:

	http://imagejdocu.tudor.lu/doku.php?id=plugin:utilities:action_bar:start

Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
Make Fiji-daily pass again

Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
Make Fiji-daily pass again

Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
Fix Find Jar For Class for use as plugin

When this developer changed the Beanshell script to be able to be
run from the command-line, he forgot to test whether things still
work when the script is called via ImageJ's menu.

Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
TrackMate_: fix bug preventing track merging and splitting in some cases

Noticed by Jan Brocher:
We were using the POSITION_T to check if 2 spots were in the next or
previous frame when determining if they are elligible to a splitting or
merging event.
This would of course fail as soon as the time calibration put more than 1
in units of time between frames. For instance a frame interval of 5
seconds would make any splitting or merging events not-detected.

The proper way to do it is to use the FRAME feature of each spot, which
correctly reports the frame number, whatever is the physical frame
interval.

While at it, use the FRAME feature anywhere we can.
Signed-off-by: Jean-Yves Tinevez <jean-yves.tinevez@pasteur.fr>
Merge remote-tracking branch 'origin/master' into track-mate

Conflicts:
	src-plugins/TrackMate_/pom.xml
	src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/visualization/hyperstack/TrackOverlay.java

Signed-off-by: Jean-Yves Tinevez <jean-yves.tinevez@pasteur.fr>