Include MANIFEST for pypi source distribution. Provide point release with fixes ez_setup included. Fixes #211
catch missing chrom exceptions for BigWig lookups
Merge branch 'master' of github.com:arq5x/gemini
Skip variants with the FILTER flag set on loading.

Most of the built in tools don't seem to use this flag, but should.
It also requires the user to use it every time they want to do a query.
This change makes GEMINI more conceptually a database of all of
the possible real variants.
Revert "Skip variants with the FILTER flag set on loading."

This reverts commit 29ec301f0c8167802ecb5889b658db67bba56bb9.
add missing test files
Merge branch 'master' of github.com:arq5x/gemini
Added permutation testing.

Also fixed the asymptotic p-value calculation which was reporting
slightly higher p-values than expected.
Merge branch 'master' of github.com:arq5x/gemini
Added --permuations to the documentation.
Added --passonly flag to gemini load.

This will skip all variants which have the FILTER flag set,
defaults to False.
Added --passonly documentation.