Fix source code links moved to the scifio-tools foder
Remove explicit test group declarations from build.xml

In these cases, we want to run all of the tests no matter what, so there
is no need to declare the group as "all".
Make sure that tests are compiled before being run
CellSens: catch exceptions when parsing tags

Fixes ticket #10611.
Amira: fix reading of > 4 GB files

Fixes ticket #10623.
LZW: fully allow truncated data

Fixes ticket #10647.
FV1000: prevent exception when thumbnail file is missign

Fixes #10699.
Micromanager: fix file finding for single-channel datasets

Fixes #10610.
Bio-Rad Gel: fix pixel offset calculation

Fixes #10622.
Do not add MetadataOnly elements to OME-TIFF XML

Fixes #10734.
Photoshop TIFF: omit extra layers
Leica LIF: record each tile in its own series

Fixes #10634.
Zeiss CZI: fix parsing of linescans

Fixes #10566.
ND2: prevent exception when parsing the gain value
Make check for Fiji-ness less restrictive
SIS: read pixel sizes and exposure from cellSens TIFFs

Fixes #10743.
Bio-Rad Gel: add explanatory comment
SIS: enforce TIFF suffix

...to prevent the SIS reader from picking up .vsi data.
Merge pull request #478 from melissalinkert/april-bug-week

Final 4.4.7 bug fixes
Merge pull request #379 from sbesson/logging_docfix

Fix source code links moved to the scifio-tools foder