add split counts for small SVs
more on split-read scoring for small SVs
more
first pass of split-read scoring for small SVs
add debug info
add debugging
add debugging info
revised breakpoint offset to deal with micro-homology.
add debug
add debug
more debug info
debug info
remove debug info
Merge branch 'MANTA-20-xchen2'
- Add split-read scoring for small SVs
- revise breakpoint offsets to enable correct evidence with large micro-homologies.

Conflicts:
	src/c++/lib/applications/GenerateSVCandidates/SVScorer.cpp
	src/c++/lib/manta/SVScoreInfo.cpp
fix a bug introduced in merging.
Merge branch 'master' of https://github.com/StructuralVariants/manta