added missing method
perltidy
genbank_ref_extractor: added assembly to exported data
genbank_ref_extractor: small typo on documentation
genbank_ref_extractor: changed default assembly regex
genbank_ref_extractor: move 'require's to GetOptions section (trying to predict all errors at the start)
Merge pull request #25 from carandraug/bp_genbank_ref_extractor

Bp genbank ref extractor
Merge branch 'master' of github.com:bioperl/bioperl-live
Fix hsp_length(), it was returning twice the length of the aligment
POD clarifications
Initialize Bio::SeqIO object throught the seqio() method instead of next_read() and not no initialize Bio::SeqIO before we have reached the ##FASTA section of the GFF stream
More informative error message
Merge branch 'master' of github.com:bioperl/bioperl-live
Added select_noncont_by_name method to Bio::SimpleAlign.
Added tests. All tests pass, although test count was off beforehand and was corrected.

Signed-off-by: DaveMessina <online@davemessina.com>
Handle empty reference sequence description more gracefully
Merge branch 'master' of github.com:bioperl/bioperl-live
Merge branch 'master' of github.com:bioperl/bioperl-live
correct test count
correct test skip count
fix some volatile remote tests, allow some fuzziness with re: to returned results (due to ID switches, variable seq, etc)