Updated download links + version info
 - Documentation reset;
 - Improved layout structuring;
 - Updated javadoc and ontology doc;
 - Deployed to live server;
Merge branch 'dev'

Conflicts:
	build/web/WEB-INF/classes/pt/ua/bioinformatics/coeus/common/Builder.class
	build/web/documentation.html
	build/web/index.jsp
	build/web/science.html
	build/web/sparql.html
	build/web/xml-to-html.xsl