Write sequences as fasta to tmp dir
Auto scaffold genome
Generate genome alignments
Plot genome rearrangments
Plot alignments along x-axis of chart
Swith x and y axis
Merge branch 'rearrangement' into develop
Create gene database based on numbers
Find orthlogs using phmmer
Reorganise rake tasks
Parse hmmer output
Cluster hmmer data
Copy ortholog data over
Add R124 genes to ortholog analysis
Estimate ortholog clusters
Update to latest version of genome build
Update alignment plot for new genome build
Re-organise rakefile into namespaces
Rake task to generate genome size data
Add strain to genome size data