changing order in CMakeLIsts

Signed-off-by: Paul Newman <pnewman@robots.ox.ac.uk>
added bundle install directives and library install directives

Signed-off-by: Paul Newman <pnewman@robots.ox.ac.uk>
added code to remove <MOOS_BINARY> </MOOS_BINARY> tags from start and end of string.

Signed-off-by: Paul Newman <pnewman@robots.ox.ac.uk>
Namespace the alogtools library
Improve handling of file IO problems

- In particular we now deal better with file
  permission problems
- Overhauled exception hierarchy in libAlogTools
Merge pull request #1 from aharrison24/devel

uIndexedPlayback: Improved handling of file io problems