[DOC,FIX-#1094] Creating copies of demos for graph algorithms into subdirectory.

git-svn-id: http://svn.seqan.de/seqan/trunk@14406 e6417c60-b987-48fd-844e-b20f0fcc1017
[DOC,FIX-#1049] Moving demo for StringEnumerator.

git-svn-id: http://svn.seqan.de/seqan/trunk@14407 e6417c60-b987-48fd-844e-b20f0fcc1017
[DOC,FIX-#1049] Update to demo for SequenceStream.

git-svn-id: http://svn.seqan.de/seqan/trunk@14408 e6417c60-b987-48fd-844e-b20f0fcc1017
[DOC,FIX-#1094] Adding example to module modifier.

git-svn-id: http://svn.seqan.de/seqan/trunk@14409 e6417c60-b987-48fd-844e-b20f0fcc1017
[DOC,FIX-#1049] Adding demo for the sorter pool.

git-svn-id: http://svn.seqan.de/seqan/trunk@14410 e6417c60-b987-48fd-844e-b20f0fcc1017
[DOC,FIX-#1094] Moving demo for findRepeats.

git-svn-id: http://svn.seqan.de/seqan/trunk@14411 e6417c60-b987-48fd-844e-b20f0fcc1017
[DOC,FIX-#1094] Removing old demo stream_read_fastq_gz.cpp.

SequenceStream is much easier to use and the recommended way now.

git-svn-id: http://svn.seqan.de/seqan/trunk@14412 e6417c60-b987-48fd-844e-b20f0fcc1017
[DOC,FIX-#1094] Moving demo for getTerminalSize().

git-svn-id: http://svn.seqan.de/seqan/trunk@14413 e6417c60-b987-48fd-844e-b20f0fcc1017
[DOC,FIX-#1094] Reformatting and moving template_subclassing.cpp.

git-svn-id: http://svn.seqan.de/seqan/trunk@14414 e6417c60-b987-48fd-844e-b20f0fcc1017
[DOC,#1094] Adding example for alignment with AlignmentGraph.

git-svn-id: http://svn.seqan.de/seqan/trunk@14415 e6417c60-b987-48fd-844e-b20f0fcc1017
[DOC,FIX-#1094] Showing ArgumentParser demo in dox documentation.

git-svn-id: http://svn.seqan.de/seqan/trunk@14416 e6417c60-b987-48fd-844e-b20f0fcc1017
[DOC,FIX-#1094] Improving demo situation for MarkovModel.

git-svn-id: http://svn.seqan.de/seqan/trunk@14417 e6417c60-b987-48fd-844e-b20f0fcc1017
[INTERNAL] Removing legacy build system support.

git-svn-id: http://svn.seqan.de/seqan/trunk@14418 e6417c60-b987-48fd-844e-b20f0fcc1017
[DOC,FIX] Fix in dox builder.

git-svn-id: http://svn.seqan.de/seqan/trunk@14419 e6417c60-b987-48fd-844e-b20f0fcc1017
[DOC,FEATURE] Adding demo output to repository.

If there is a file FILE.cpp.stdout or FILE.cpp.stderr for a demo file FILE.cpp then
we will compare the contents of these files to the output of the program to standard
output or error besides checking the result code.

The .stdout and .stderr files can also be included from dox using `@include` to make
the comments in the documentation slimmer.

git-svn-id: http://svn.seqan.de/seqan/trunk@14420 e6417c60-b987-48fd-844e-b20f0fcc1017
[DOC,FEATURE] Copying out demos; displaying path to demo/snippet below code box.

git-svn-id: http://svn.seqan.de/seqan/trunk@14421 e6417c60-b987-48fd-844e-b20f0fcc1017
[FIX] Fixed an FM Index issus with CompressText

git-svn-id: http://svn.seqan.de/seqan/trunk@14422 e6417c60-b987-48fd-844e-b20f0fcc1017
[FIX] Reverting [14404], needs to be reviewed first.

git-svn-id: http://svn.seqan.de/seqan/trunk@14423 e6417c60-b987-48fd-844e-b20f0fcc1017
[DOC] Removing graph demos for DDDoc documentation.

git-svn-id: http://svn.seqan.de/seqan/trunk@14424 e6417c60-b987-48fd-844e-b20f0fcc1017
[FEATURE] Small demo package fx_tools that contains NGS data utilities.

git-svn-id: http://svn.seqan.de/seqan/trunk@14425 e6417c60-b987-48fd-844e-b20f0fcc1017