high
Update README.md
Cleaned up documentation mess and added Makefile @arvestad @tzcoolman #reviewthis
Merge pull request #1 from brainstorm/master

Clearer way to compile the bloom filter and general cleanup
Added some preliminary test command in the Makefile
Added simple FastQ file generator to run tests
More indent code; New command: -h; New fasta add function in 'bloom build'; New check and remove system(New link list supported parallel process; Modified fastq decontamination system);
more nice looked
Merge branch 'master' of https://github.com/tzcoolman/DRASS
Added minimal test suite, only works at UPPMAX for now
Merge pull request #2 from brainstorm/master

Added test suite for UPPMAX
Prepending valgrind to tests, there are huge memory leaks that need to be cleaned up
Merge pull request #3 from brainstorm/master

Several memory management problems should be fixed
We need a -o flag so that the output bloom filter is in the right place
Starting support for cmake
Updated Makefile, supporting MacOS, until cmake support works.
Added forgotten lines for mac support
Download reference ecoli genome if not found from TogoWS, also have dummy QQQQ reads to minimize false matches
Merge branch 'master' of https://github.com/arvestad/DRASS
new default saving path; new -o order('-o' short for output. replace the previous command '-p'); simplified function, one file per run; new -r order ('-r' short for reference. replace the original '-l' command)