kdjjsjdswq
Merge branch 'master' of github.com:minillinim/mikezbioscripts

Conflicts:
	map_plot_pipe/makeSam.py
Merge remote-tracking branch 'origin/master'
Merge pull request #7 from wwood/master

die when dead
Merge pull request #8 from wwood/master

tests, and better use of memory so less tempfiles are created
Merge pull request #9 from wwood/master

bwa mem support in makeSaqm
commenting
Merge remote-tracking branch 'mike/master'
explicitly die on single ended bwa-mem, add some doco
merge a lot
Merge remote-tracking branch 'origin/master'
added ability to map using interleaved fastq files