Interleave BAM compression with sort/dupmark/index
Merge branch 'dev' of https://github.com/amplab/snap into dev
Interleave multithreaded decompression with file read
Remove debug, cleanup offset calc in dupmark
merge
debug
Minor fixes and asserts
Use freelist/readylist for decompress
Merge branch 'dev' of file:////erg03/c$/ravip/amplab/snap into dev
Fix fq.gz, bam index - in progress
Remove debug printfs
0.16alpha.37: Use concurrent gzip threads for fq.gz and BAM files