Add commify.pl, to commify numbers
Use full path in prefix
Add bwa trimming to trim_fasta
Allow passing of the filehandle directly for ReadFastx
Add collapse_duplicates
add_type script
Add ascii2csv
Add grep.pl
Add maf2bed, to convert a maf alignment to a bed file
Converts a bed and a reference to a fasta file
Add sequence_counts
Add phred quality trimming to trim_fasta
sort and collapse with paired end sequences
Update all scripts