Got the Project linking interface working.
Removed a bunch of code that is now unnecessary.
Rewrote the alert system to work with a bootstrap popover.
Replacing code that I removed that broke stuff.
Organized Mustache templates.
Converted login process to a Mustache Templates.
Making name more specific.
Moved the project panel over to Mustache
Made it so I didn't accidentally load credentials into github.
Fixed popover alerts to work.
Starting to get things working.  Upload to server now works.
Delete now works.
Tweaking popovers so you can delete them by clicking. Also cleaning up some method names.
Got Creating new projects working.