Fix lesspipe.sh detection in custom PATH

The detection of lesspipe.sh has to be done after setting PATH as it
could be installed in a non-standard bin directory. For example,
Homebrew installs lesspipe in /usr/local.
[Fix #383] Do not set $MANPATH

man dynamically searches for man pages based on $PATH.
[Fix #385] Do not set $INFOPATH
[Fix #381] Remove the path_helper workaround
Use $GNUPGHOME in GPG agent startup

Use the value of $GNUPGHOME, to facilitate moving GPG's home.

This lets users who keep their GPG keyring on external devices or alternate
folders use the gpg-agent autostarting, even if $HOME/.gnupg does not exist.
source secrets file and put php53 in path
add personal theme
source all yard config file for zsh
add line break to trongrg theme
change cucumber color as it is not readable with solarized theme
removed confirmation from cp, rm, mv, ln