Merge branch 'release/0.153' into develop
Merge branch 'master' of /software/vertres/git/origin/vr-pipe into develop
corrected and future-proofed default scheduler id tests now that there are more than 2 schedulers
also pass cwd to testing submission handlers, so that multi-step pipelines pass tests on ec2 scheduler
no more scheduler methods start/stop_command/scheduler, since these no longer do anything
replace bam2fastq special chars in the fastq output filename
test data files for hipsci pluritest pipeline
data file required by pluritest R package
pluritest gene expression analysis pipeline check in
steps for pluritest pipeline; reformat genome studio and pluritest plot production
corrected typo
Merge branch 'develop' of /software/vertres/git/origin/vr-pipe into develop
adding to descriptions and passing by perltidy
replaced dispatch_vrpipecode with dispatch_wrapped_cmd and simplified output file name format
removed unused parameter
work with paths that were made by multiple setups if those all resolve to the same stepstate
Merge branch 'develop' of /software/vertres/git/origin/vr-pipe into develop
added notes to help with troublesome Time::Format or Redis module installs
moved job name uniqueing code from lsf to SchedulerMethodsRole->_job_name(unique => 1)
combined submit_command() and submit_args() into submit_command(), which takes the inputs of the later and returns their combined output