Try to fix Jenkins
Fix up markdown plugin
Update database scripts with supporting indices for SymLinkFileReporter, SequencerRunReporter, and BasicDecider
Iterate version numbers

Conflicts:
	pom.xml
	seqware-archetypes/seqware-archetype-decider/pom.xml
	seqware-archetypes/seqware-archetype-decider/src/main/resources/archetype-resources/pom.xml
	seqware-archetypes/seqware-archetype-java-workflow/pom.xml
	seqware-archetypes/seqware-archetype-java-workflow/src/main/resources/archetype-resources/pom.xml
	seqware-archetypes/seqware-archetype-legacy-ftl-workflow/pom.xml
	seqware-archetypes/seqware-archetype-legacy-ftl-workflow/src/main/resources/archetype-resources/pom.xml
	seqware-archetypes/seqware-archetype-module/pom.xml
	seqware-archetypes/seqware-archetype-module/src/main/resources/archetype-resources/pom.xml
	seqware-archetypes/seqware-archetype-simple-legacy-ftl-workflow/pom.xml
	seqware-archetypes/seqware-archetype-simple-legacy-ftl-workflow/src/main/resources/archetype-resources/pom.xml
	seqware-archetypes/seqware-archetype-simplified-ftl-workflow/pom.xml
	seqware-archetypes/seqware-archetype-simplified-ftl-workflow/src/main/resources/archetype-resources/pom.xml
	seqware-common/pom.xml
	seqware-distribution/pom.xml
	seqware-ext-testing/pom.xml
	seqware-meta-db/pom.xml
	seqware-pipeline/pom.xml
	seqware-portal/pom.xml
	seqware-queryengine-legacy/pom.xml
	seqware-queryengine/pom.xml
	seqware-webservice-dto/pom.xml
	seqware-webservice/pom.xml