exonerate-text now parses protein queries into proper single-letter sequences
Update main __init__.py docstrings
Fix missing SearchIO.__init__ doctest file
Fix exonerate protein query set bug
QueryResult.hit_map now does deepcopy() on the mapped hits
Update common SearchIO objects' properties with docs
Raise a more verbose TypeError
Accept longs (e.g. from BioSQL under MySQLdb)
Less verbose TravisCI install logs
Install mysql-python under TravisCI to test BioSQL
Remove miscommited print in _objects.Hit
Update _objects container item properties for easier docstrings
Update demo file
Hit.__str__ now displays query description
Update HSP.__repr__ to be more concise
Update main __init__ docstrings
Add demo file for docstring example
Add object model docstrings
Add SearchIO to the doctest list in run_tests
SearchIO.__init__.py doctest does not write files anymore