Changed the structure of the manual, started using doctools.
Modified DynamicByteBuffer in EphemeralFileSystem such that it no longer clears itself out after
a database is shut down, but lives on as a JVM-wide pool of byte buffers until the JVM is shut down,
or until the JVM needs the memory and garbage collects the pools.

This addresses a race condition where one database being shut down would clear the pools,
leaving a brief window where another database could get null back when asking for a pool, causing
crashes.
Merge pull request #481 from nawroth/doctools

Changed the structure of the manual, started using doctools.
Remove python-embedded from the repo and the docs.
Merge pull request #483 from nawroth/remove-python

Remove python
Adding back the upload script for now.
Updated method name in kernel javadocs.
Remove python-embedded from the list of artifacts to deploy.
Merge pull request #484 from jakewins/dynamicbytebuf-pools

Fix for flaky EphemeralFileSystem tests
Sets the correct location of the version file
renamed coordinator to arbiter; inactivated coordinator; removed unused plist; added log4j jar; cleaned up unused cordinator directory