Introducing the new library files
Organized library files
removed old files
Added basic functions
Edited read_alignment method and added two basic iters
Added collapse method
Implemented write_to_file method
Changed names of main file
Implemented basics of the AlignmentList class and modified the write_to_file method to accomodate for concatenation
Added costum error handling
Added code documentation. Started implementing class initialization with dicts
Finished implementation of class initialization with dict object and added two _set functions for the input format and model
The AlignmentList.write_to_file method is now corrected to handle only list of alignments. Concatenated or single dict object alignments are now returned as Alignment objects
Corrected several launching bugs
Corrected launching bugs
First runnable version of the new program
Added check_sizes method
Corrected several bugs
First runnable version with single alignments
Corrected bugs