Added #PBS -W umask=0007 to Header.ftl, so the .out and .err files are at least readable by the group (defaults to rw for owner only)
HemoDB: completed R scripts, working on documentation
Merge with latest
Merged with origin dev
modules/compute/protocols/Fastqc.ftl
patched my patch :P
Moved XGAP from apps to modules
Moved and updated xQTL generator
Moved GUI files into xQTL app
Cleanup: removed mydas
Cleanup: removed old R API
Cleanup: removed unused XGAP matrix stuff
Re-added LoginSettings.java to index
Added TODO list for dev merge and copied dev XqtlRApiService.java to _NEW
Added XGAP module to xQTL build script and fixed paths
Renamed dev XqtlRApiService to _NEW
Restored master XqtlRApiService
Corrected paths for webtest
Corrected paths in old build script
Restored matrix tests