improved output index.html formatting, added My Microbes image (now hosted on AWS) and added initial text for alpha rarefaction
Addes time series area plots, as well as new usage options."
Added time series summary plots option tpo script.
Changed personal_microbiome_readme to README.md
Merge pull request #9 from johnchase/master

Added time series area plots 
Merge branch 'master' of github.com:qiime/personal-microbiome-delivery
general project management updates
renamed test file to adhere to PyCogent coding guidelines
fixed basic issues, but tests still need to be written
cleaned up some script help text

this still needs a bit of work
updated to include some more useful information
updates to text and adding taxa plot links

adding Gilbert's draft beta diversity and links to the new taxa plots
addition of simple test data

this includes three individuals, so allows for full testing of the system in ~5-7 minutes.
added new HTML pages taxonomy plots for both self and other

this is one way of supporting comparison of the two different sets of plots for users. kind of ugly and maybe too clunky though, so currently investigating other approaches too (see this QIIME issue: https://github.com/qiime/qiime/issues/601).
added email address and updated beta diversity text

this commit addresses issues #5 and #8.
added text on taxonomic composition to address issue #12.
added example output
Merge pull request #11 from gregcaporaso/master

updates to text and functionality; addition of small test data set
Added support for synchronized scrolling of taxa summary plots when comparing self to other.
Merge pull request #18 from jrrideout/issue_13

Added synchronized scrolling for comparing taxa summary plots