fix parameters and assuming coverage not read counts in coverage_file
Merge branch 'master' of github.com:BinPro/CONCOCT

Conflicts:
	concoct/CONCOCT
Fixed some arguments that conflicted and conflicting log calculations
better email since scilifelab might be cancelled later
Added piping functionality
test for piping functionality
Merge branch 'development' into tests
Bugfix
Merge branch 'development' into tests
Removed tests for piping functionality, unsuccessful
PCA output is csv and with row names+header
Tests adapted to new pca output
Update execution flags in readme
Updated description in setup.py
tests adapted to basename output
Fix typos in tests
New basename instead of output implemented
Update readme about new output strategy.
Basic parallelization done
Tests for bic file
Removed printout and added tests for bic not appended to