Correctness of .deb package and help messages revised
Effect tries to reconnect 3 times when an error occurs. After 3 times, writes the failing batch to another file
Reduce time waited between effect retries
Messages removed from TDT output, FILTER column from VCF file can contain dots
Annotation of FILTER column in VCF records after applying a filter
Command-line arguments sorted to make them more intuitive for user help
Refactoring of XXX_runner files
Getting file descriptor and writing assoc/TDT output extracted to functions
Filtering records, writing them to output files and freeing them extracted to functions
Unit tests updated
Size reduction of dataset for effect testing
Size reduction of dataset for TDT testing
Deployment scripts updated to version 0.2.1 and more more SCons-style
SConscript for unit tests
Epistasis dataset creation tested (writing to output file not included)
Dataset now stores all genotypical information
Write header of epistasis dataset
Epistasis dataset written to file using an independent thread
Samples from dataset grouped by condition (first cases, then controls)
Memory corruption when allocating memory for the file containing the entries with errors