Set minimum distance between pair reads and change big deletions in rna server
Update submodules
Merge branch 'next' of git://amartin/bioinfo-c/hpg-aligner into next
Update SConstruct script
Improve reported alignments for pair reads, add --report-unpaired option, fix some bugs and clean code
SConstruct actualization and remove rna comments
Merge branch 'next' of git://jtarraga/bioinfo-c/hpg-aligner into next
Update options display
Filter pairs completed and new BWT alignments filter options added
Change BWT server next stage
Add some log_debug messages and modify the CAL filter by number of seeds: now, 0.3 * maximum number of seeds in a CAL
Merge branch 'next' of ssh://amartin/home/hmartinez/appl/bioinfo-c/hpg-aligner into next
Update the log-level default to LOG_INFO_LEVEL
Fix a typo bug
Update seeding and CAL parameters: num_seeds and min_num_seeds_in_cal, improve parameters parsing and display
Update submodules