Adding edwExperiment table.
Tool to do summary evaluation of qa is about 2/3rds baked.
Now 3/4 baked.
First version of overall edwQaEvaluate seems to work.
Starting to work on 'glue script' based analysis pipeline.
For ENCODE3 experiments try and figure out subtype of RNA-seq
Bumping to version 2 including splitting out RNA-seq into subtypes.
Making it so unicode escapes just get passed through instead of aborting.  There are some of these in the json we're parsing from Stanford in ENCODE.
Making edwMakeValidFile used it's own query for fetching intact files since during revalidation it does pay attention to files with error messages.
Moving in routines to find other file in a pair of paired-ended fastqs to library.  Exposing edwBwaIndexPath.  Making some eap (encode analysis pipeline) directories.
Adding edwQaFail, edwAnalysisJob and edwAnalysisRun tables.
Moving routines to find other file in a paired-end pair of fastqs to library.
Relaxing RNA enrichment threshold.
Adding edwQaEvaluate to make chain.
Making new daemon for analysis jobs.
Adding script to restart daemons.  Needed when daemons hand or hgwdev reboots.
Analysis scheduler is starting to work.
Routine to store analysis results in database is about half baked.
Starting to work on json output.
Seems to mostly work.  It is creating valid edwFile records for the output, scheduling validation, and making json output in the draft format we've agreed to with Stanford.