MANTA-58 fix off-by-one error
MANTA-58 demo a new split edge size check
MANTA-58 first pass at a fix

add 100 bases of flanking refernece seqeunce at the assembly stage
which is reserved for split read alignment and not available for
breakend discovery (ie. not part of the contig alignment)
MANTA-58 debug msg
MANTA-58 fix off-by-one in scanEnd, assert conditions
MANTA-58 off by one correction
MANTA-58 fix issue removing small-variants
MANTA-58 tweak debug output
typo
MANTA-58 lower split evidence strictness
formatting
update cl