Made the tests run form Index

This lets me run mocha without `--recrusive`.
Mocha now tests from Coffee by default

In order to improve test failures, normal debug testing tests on the
project source. The `test:build` flag will compile and test the compiled
source.
Stubs Exclusion

In theory *(assuming by blog pattern exclusion is correct)*, the stubs
directory is now excluded from the coffee-compiler. Ensuring that we
don't have any unexpected files in our stubs directories.