changed to standard exception in new minpermdist
more generic permutation wrapper, improved new minpermdist class
removed many of the old minpermdist routines
cleaned up mindist, added wrappers for backward compatibility
deterministic minpermdist is obsolete for now
removed overlap potential from build till it has again a working interface
added tests for new minpermdist
fixed 2 bugs in new permutational alignment routines
first simple version of new aa minpermdist - no molecular symmetry so
far
fixed bug in gramm_schmidt, zeroev
modularized exactmatch
standard cluster alignment has now iterator interface
minpermdist uses standard alignment instead of exactmatch
fixed bug in standard alignment if it is a no match
minpermdist wrapper for atomic cluster
testmindist only needed in test folder
added wrapper optimize_permutations
moved mindistwrapper to backward compatibility
some more mindist functions obsolete
made most of mindistutils obsolete