Some Progress

Added a few things for command line access, no where near done
More Progress

Added more to the command line functions. Added a few flags to tell
goHome() exactly what to do. Saved a few lines by putting goHome() and
writeOut("Done")at the end of Choicefunct()
Changed conditionals to know if cmd line

The conditional statements that control paramaters now consider if
simulating, or running from command line, if neither, it asks for input
from the user. I also fixed two bugs with the very same conditionals,
they were flipped in two cases and only asked the user when in
simulation mode. Added minor recognition for my name (still
reconsidering)
Bug fixes, YAY!

As can be expected, adding large semi-untested portions of code let in
some wild life of the tiny kind. This is the time to kill those pesky
things :) Also added a few things.