Stripped down the src,lib dirs to contain only classes needed to
build SeedScan (and no other asl tools).
Modified the metrics to output all plots to: outputs/YYYY/YYYYDDD/YYYYDDD.metric.png
Cleaned up build.xml target=jar and PlotMaker2
Merge branch 'master' of github.com:joeledwards/asl-java-tools

Synchronizing joel github master with my cleaned up master branch