Merge pull request #1 from biojava/master

test
Merge pull request #20 from heuermh/master

Minor source cleanup, use jdk 1.6 @Overrides instead of /** {@inheritDoc} */ doc tags
clean up

Signed-off-by: aalhossary <amr_alhossary@hotmail.com>
more clean up

Signed-off-by: aalhossary <amr_alhossary@hotmail.com>
Merge pull request #21 from aalhossary/master

just clean ups
Merge pull request #2 from biojava/master

ttt
Merge pull request #22 from aalhossary/master

Accept Merge pull request #2 from biojava/master
Create .travis.yml

starting to use travis-ci
Update readme.md

adding travis-ci build status icon
Update readme.md
Merge pull request #3 from biojava/master

update
using temp file for		File tmp = File
				.createTempFile("volvox_all_genes_exon_uppercase", "fna");
		tmp.deleteOnExit();
		FastaWriterHelper.writeGeneSequence(tmp, geneSequences, true);


Signed-off-by: aalhossary <amr_alhossary@hotmail.com>
Merge branch 'master' of https://github.com/aalhossary/biojava.git
using temporary file instead of updating
volvox_all_genes_exon_uppercase.fna

Signed-off-by: aalhossary <amr_alhossary@hotmail.com>
Merge pull request #23 from aalhossary/master

using temp file for JUnit instead of volvox_all_genes_exon_uppercase
adding more documentation
adding info re. mailing lists
Ignoring calculation time in AFPChainTest
Ignoring some more temp files
Removing non-ascii characters from TestSECalignment.java

Some strings contained \0 characters so that they could be compared to a
raw char[]. Removed the delimiting characters and used the proper length
variable instead.

The binary problem was discussed in comments of pull #14