SEQWARE-1513 - Match PDE style for Decider jar naming
Standardize on JOpt 4.4, demonstrate default parameters in BasicDecider

While we're at it, change the rather restrictive default column size for plugin help output.
SEQWARE-1622 - check for files before launching
SEQWARE-something-or-other-jira-down Add reverse chronological sort as an option for the BasicDecider
Clean-up logging
Make chronological (reverse) order the default
Fix decider formatting for test
Merge pull request #100 from SeqWare/feature/SEQWARE-1625_decider_improvements

Feature/seqware 1625 decider improvements