Added boundary conditions

Set the boundary conditions to be all reflective.
added boundary

Working on adding the boundary
Current best optimal geometry

Added the MCNPX input deck from the current best optimal geometry.
Reformatted file

Removed trailing characters greater than 80 charaters on a line and
covertered to a unix format with dos2unix.
Added front and back tallies

Added the front and back tallies to check the vacuum boundary conditions
Added a script to submit mcnpx jobs

Added a quick little script to submit MCNPX jobs to the Torque Maui
Queue
increased NPS and running

Increased the NPS and added the mpirun mcnpx to the script
Added materials

Added the materials to the input deck