Added GNUmakefile from https://raw.github.com/scolin/latex-makefile/master/GNUmakefile (97dc4c5fda78a0a3c7cad6671a79b5aca17b5a32)
Added *.bbl, *.spl and *.backup to MORECLEAN for more complete 'make clean'.
Ignore ._d folder created by the makefile
Ignore compiled files
Added dummy bibtex file.
Added dummy sections
Added an example pdf paper to be included.
Added section to include external pdf.
Added example thesis main file.
Moved example files to own folder.
Updated readme.