Merge tag 'release-1.1d' into develop

release-1.1d
Fix args key word to avoid applying repeated model
Add CLI logger output
Add CLI logger output
fix output path's matching pattern
change log text
remove log info
Merge pull request #12 from MengZhang/develop

Develop pull request from meng
Updated dependencies and fixed DOME bug

* Updated translator dependencies
* Fixed DOME case bug
* DEBUG logging enabled
Cleaed up default output
Merge branch 'cli-integration' into develop

*Added support for CLI logging
Enabled DEBUG logging

DEBUG logging for develop branch.
Prepare for release 1.1e
Merge branch '1.1e' into develop
Merge branch '1.1e'
Update dependencies

* Update dome to 1.1.1
* Update agmip-core to 1.0.1
* Update translator-dssat to 1.2.3
* Update translator-generic-csv to 1.1.2
Merge branch '1.1e'
Merge branch '1.1e' into develop
Bumped to next development version
Updated dependencies