Changed = [] to = {} whenever necessary
Changed i++ to ++i
Renamed atom1,2 to atom0,1
Replaced obj.children[0].geometry by new THREE.Geotry()
Rewrote createLineRepresentation
Rewrote createStickRepresentation
Renamed ev to e
Renamed p1,2 to p0,1
Simplified createLineRepresentation and createStickRepresentation
Moved subdivide downward
Simplified createLineRepresentation argument
Simplified createTubeSub
Renamed drawSurface to createSurfaceRepresentation
Removed removeSolvents
Merged getExtent into resetView
Moved createSurfaceRepresentation upward