Finally got release, debug versions running with vs 2012.. C++ Release flags for the roadrunner part need to be changed as well. "Before" only the C flags for thirdparties needed to be modified.. Not sure whats causing this change

git-svn-id: https://roadrunnerlib.googlecode.com/svn/trunk@911 c0027639-9190-0b57-01eb-f09a03790dae
Ran tests on RoadRunnerNightly machine..

git-svn-id: https://roadrunnerlib.googlecode.com/svn/trunk@912 c0027639-9190-0b57-01eb-f09a03790dae
Merged in version 741 from Minimization branch:

Added virtual constructor to thread class for proper cleanup
Changed file log so that one can run Roadrunner without logging to a file

In C API Header:
Renamed createRRInstanceE to  createRRInstanceEx
Renamed getVersion to getAPIVersion (returns the version of the C API)
Added api function getCPPAPIVersion (returns the version of the cpp api)
Added api function  getExtendedAPIInfo().. Takes no handle

Moved 'job' function to jobs unit
Moved plugin functions to plugin unit


git-svn-id: https://roadrunnerlib.googlecode.com/svn/trunk@916 c0027639-9190-0b57-01eb-f09a03790dae
Merged revision(s) 761-768 from branches/minimization_1:



git-svn-id: https://roadrunnerlib.googlecode.com/svn/trunk@917 c0027639-9190-0b57-01eb-f09a03790dae
Merged revision(s) 769-775 from branches/minimization_1:


git-svn-id: https://roadrunnerlib.googlecode.com/svn/trunk@918 c0027639-9190-0b57-01eb-f09a03790dae
Merged revision(s) 776-799 from branches/minimization_1:
Enabled folder globbing in poco. 
Added to plugin manager to load all plugins in plugin folder

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Removed poco VS project files.. will never be used anyway
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Removed a lot of meaningless files in poco folders
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Added UI frames
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Deleted more poco nonsense
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Found a problem with callconvention defines. Defined at too many places.
changfed all rrCallConv to rrcCallConv in the C api

Added more util functions to rrVCLUtils


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added void* userdata to executeEx plugin function. This way data can be handed to the plugin more conveniently than trough a specific parameter.
Refactored: RRResult is now RRData
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Getting on with the job and jobs
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Fixed thread problem. Needed to initialize callback functions to NULL in ctor, if not used.
Fixed sleep function. Was always sleeping 10ms..

Thread work need to be sharpened p later on.. too many sleeps around
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Updated the rrWinC UI application
Make the plugins use the same logger as everything else..

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Got a framework for plugin callbacks working.

Strive to have the plugin execute function non blocking, and put plugin work in a thread.
Setup application callbacks that are called as the plugin worker start, progress and finishes..

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Almost finished setting up plugin parameter class
Add noise plugin is a good demo for plugin design..

Added Plugin handle typedef and changed many plugin API functions to take a PluginHandle as Parameter
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Tested to call getCapabilities with no model loaded
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Before setting up fullSpace minimization plugin
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Added fullspace fit thread class
Added callbacks to fullspace fitting plugin

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Memo logger
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Updated fullSpaceFittingFrame
Added some utility functions
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Added freeing of jobs
Added virtual desctructors to ThreadPool class so that derived classes can clean up

Hard coded minimization code, seem to do what it supposed to..

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Removed 'waitForStart' in threadpools constructor

FullSpace fit 'works'
Changed threadpools 'isWorking' function to check if any thread is active, instead of looking at nrOfWorkers



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Fixed full space minimization to inspect input data for species, start and stop time and number of time points.


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Updated Plugin test application
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Added shut down logic to rrWinC application.
Have to wait for logFileReader thread to finish

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git-svn-id: https://roadrunnerlib.googlecode.com/svn/trunk@919 c0027639-9190-0b57-01eb-f09a03790dae
Merged revision(s) 800-808 from branches/minimization_1:
Fixed libsbml problem when bringing in its whole namespace.
Setting up roadrunners, CVode and nleq 'capabilities' properly

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minro change
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Work on parameters and capabilities...

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Fixed xml output of capabilities..
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Work on Capabilities

Getting a capabilities frame going..

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Many changes to parameters and capabilities
Data flow: When interacting with roadrunner internal data, create void* handles. When data flows one way, use data structures...
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More work on parameters, and capabilities
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One capability per plugin may make sense..

Getting UI setup for business..

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Added ini parameter functionality to UI
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git-svn-id: https://roadrunnerlib.googlecode.com/svn/trunk@920 c0027639-9190-0b57-01eb-f09a03790dae
Added some relevant docs

git-svn-id: https://roadrunnerlib.googlecode.com/svn/trunk@921 c0027639-9190-0b57-01eb-f09a03790dae
Merged revision(s) 809 from branches/minimization_1:
Tons of refactoring..
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git-svn-id: https://roadrunnerlib.googlecode.com/svn/trunk@922 c0027639-9190-0b57-01eb-f09a03790dae