Merge branch 'release/0.161' into develop
removing deleted files
updated test files and reformat cnv to bed tep
checking in small data files for testing vtrrack updtaes for cnv comparison
new cnv calling pipelines plus cnv auto qc test
new cnv comparison and mapstats update pipelines
new cnv comparison and mapstats update steps
helps if the sql is included for the test script
updated ec2 key questions to mention IAM instead of a url
privateDnsName can return different values depending on it if is called on meta or instance: normalise through host regex
no longer supply -client_token to run_instances() since it causes problems and hopefully is not necessary
no longer throw during initialize() if SGE has no queues defined
call parent initialize() after doing our own initialization, so it sees our queues; use correct instance method name up_time() instead of uptime()
removing dedicated EC2 readme since this info is now on the wiki
marked up the README in markdown syntax, and direct users toward the wiki
version bump
mention that users should read the IMPORTANT_NOTES file
Merge branch 'release/0.162'