AnnotationMaker.py -> deleted.
ProbeFinder.py -> deleted.
ChrLocPairs.py -> deleted.
ListVector.py -> deleted.
MethylAnnotation.py -> deleted.
rpy2tesing.py -> deleted 
ArrayAnnotation.py -> deleted
PerformPCA.py -> deleted
QueryDownData.py -> deleted.
mongoAPI -> deleted
ConnectToMongo -> deleted
CreateArrayFromCursor -> deleted
GetMongoCursor -> deleted
InsertToMongo -> deleted
MongoDocs -> deleted
PlotBarGraph -> deleted
PlotCA -> deleted
TestMongoConnection -> deleted
play_with_data.R -> deleted
read_data.R -> deleted
RpyExample.py -> deleted
RpyLinModel.py -> deleted
RpyPCA.py -> deleted
RpythonTesting.py -> deleted
rpyRvectorPythonFill.py
Merge branch 'master' of https://github.com/apfejes/epigenetics-software.git
Script for adding 'chr' to both annotations collection (methyl450k) and
methylation collection.