Update notes for submitted changes

* AbstractAnalysisData module handling into a separate class.
Update notes for submitted changes

* Support for parallel data modules.
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* Set upper case of FFTW variable at the right place.
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* Move gmx_ana_pos_t::g into gmx_ana_indexmap_t.
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* Remove gmx_ana_indexmap_t::bMapStatic.
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* Remove duplicate .nr members from selection structs.
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* Add some legends to C++ tool output.
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* Make gmx_ana_pos_t a C++ class.
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* Remove unused -man output formats.
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* corrected grompp constraint/DOF warning with vsites
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* Make parse_common_args() not exit.
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* Move mdrun into the wrapper binary.
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* Add option to build a standalone mdrun binary only.
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* mdrun without OpenMP with thread-MPI now uses all cores
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* Fixing manual for sc-coul description.
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* Remove forcefield-scan feature
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* made free energy PME kernel 40% faster
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* Framework for help export from wrapper binary.
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* Fixed g_tune_pme assumption that MPI is available
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* Fixed reading history_t from checkpoint