Initial changes for new allele doc fields.
Remove commented code.
Merge branch 'master', remote-tracking branch 'origin/master'
sql injection fix in mi production reports & allele form genbank file fix
Re-generate assets
First commit of script/fix_colony_fibp.rb
Tidy.
Remove production_in_progress.
Ignore genes without plans.
Add task update:partial_run.
Add lib/tasks/solr_bytemark.rake.
Merge branch 'master' into solr_doc_changes2
Fixes for test/unit/mi_plan_test.rb.
Comment-out test/functional/targ_rep/gene_traps_controller_test.rb.
Fix test/unit/test_helper_test.rb.
Re-generate assets
Merge remote-tracking branch 'origin/master' into staging

Conflicts:
	test/functional/targ_rep/gene_traps_controller_test.rb