suite-sparse: fix audit warning
bioawk: New formula
abyss; New option --enable-maxk
bowtie2 2.1.0

Closes #164
bowtie 1.0.0

Closes #163
jellyfish 1.1.10: New formula

Closes #150
lastz: new formula: LASTZ 1.02

Pairwise aligner for DNA sequences, designed to handle sequences the size
of human chromosomes and from different species.
lastz 1.03.34

Closes #115
sickle: new formula
sickle 1.2

Closes #31
mrfast 2.6.0.1

Closes #166
bam-readcount 0.4.4: New formula
blast: Support recent versions of gnutls

Add an upstream patch to support recent versions of gnutls.
Add an optional build dependency on gnutls.
Add configure --without-debug --with-mt as recommended by upstream.
Closes #161, closes #170.
vtk: fixes for 10.8 and 10.6 with python wrapping

For 10.8 : https://github.com/mxcl/homebrew/issues/16646
For 10.6 : https://github.com/mxcl/homebrew/issues/14871

Closes #180.

Signed-off-by: Jack Nagel <jacknagel@gmail.com>
sratoolkit 2.3.2-4: New formula
viennarna 2.1.1

Remove the patch. Fixed upstream. Closes #162
mafft 7.037

Closes #172
mafft: Add a test
AMOS: New formula
amos: Add dependencies

Closes #39