[BUGFIX] Don't double up paths when loading applications from outside the directory
[CS] Mark a feature pending on JRuby while we wait for a JRuby bugfix

https://jira.codehaus.org/browse/JRUBY-6994

#332
[CS] Give up on trying to make features involving the console work on JRuby

The console simply makes the features hang, and the trick of explicitly exiting the console doesn't often work. I don't know why right now.