Cartesian implementation updates after OutputManager changes… created a new branch from here to finish the cartesian stuff.
Start week 9/30 begin testing cartesian implementation JEG
Start week 9/30 begin testing cartesian implementation JEG
Merge branch 'CartesianJEG' of https://github.com/paullric/tempestmodel.git into CartesianJEG
Started test case 1 for cartesian grids (Giraldo et al. 2007) JEG
Begin testing the cartesian test case - debugging JEG
Debugging Cartesian test case - JEG
Debugging of the cartesian test - JEG
Segmentation fault at the first output call in
ComputeVorticityDivergence
Debugging cartesian test case - application of boundary conditions and
merging into the master branch
Merge remote-tracking branch 'origin/master' into CartesianJEG

Conflicts:
	.gitignore
	src/atm/GridCartesianGLL.cpp
	test/Makefile

Everything compiles, but I'm still getting NAN's in the cartesian test
that need to be resolved.
Merged with master and with some fixes in the cartesian test case. Still
need more debugging to get results for cartesian grid. Default boundary
conditions used.
More debugging of cartesian case... JEG
Debugging continues. Tried to include the Z dimension for cartesian
cases in the reference output class... added GetReferenceGridBounds3D to
bring in Z dimension for output. Barotropic instability is giving NAN's
too here.
Last commit before merging with master again...
Merge remote-tracking branch 'origin/master' into CartesianJEG

Conflicts:
	src/atm/TimestepSchemeARK4.cpp
- Changed include/netcdfcpp.h for robustness
- Ignored InertialGravityCartesianXZTest executable
- Changed indentation to use tabs
- Updated indentation in InertialGravityCartesianXZTest.cpp
Work on GridCartesianGLL

- Fixed a number of bugs in GridCartesianGLL
- Extended GridGLL to allow for rectangular patches
- Added preliminary CodingConventions guide