Include bootstrap JavaScript and jQuery

These are both required for the Bootstrap 3 responsive navbar button.
config
theme layout fix
Merge pull request #1 from tfm/master

Include bootstrap JavaScript and jQuery
Change pagination to ul of class pagination instead of div

Formatting had broken with upgrade to boostrap 3
Merge pull request #2 from tfm/master

Change pagination to ul of class pagination instead of div
theme renamed to bootstrap, resources folder added into assets, jquery and bootstrap js load moved bottom of the template.
master changes apmerged