Merge pull request #6 from mmwoodman/trunk

Move matlab bridge to github.com/mmwoodman/cymex
Adds a short tutorial exploring the HRF of the bold monitor + updates tutorials README

git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@5010 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1
Added possibility to display surface triangles as lines with different color in brain viewer.

git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@5011 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1
New connectivity visualizer and regions separation for brain visualizer.

git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@5012 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1
TVB-971
Update TVB citation text after publish.

git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@5013 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1
TVB-963
Ensure all files under TVB have Unix line endings.

git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@5014 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1
TVB-963
Revert wrong line-endings change in .met files.

git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@5016 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1
Revert wrong .mat files change.

git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@5018 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1
Changes and tweaks to new connectivity viewer and brain viewer.

git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@5019 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1
Adds 2 new hrf kernels in the Bold monitors.

git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@5020 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1
Fix the doc in PulseTrain equation

git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@5022 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1
Adds Gamma kernel for hrf to equations

git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@5024 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1
Adds an Equation datatype for a second hrf hernel: DoubleExponential + minor modifications to the previously added equation_dtype

git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@5025 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1
Adds new Equation dtype class. It defines the damped oscillator kernel (First Order Volterra kernel) originally used in the Bold monitor 

git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@5026 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1
Restructured BOLD monitor making use of the recently added Equations classes.

git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@5027 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1
Modified mem guesstimate for bold monitor

git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@5028 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1
Update the Bold tutorial according to the recent changes in the Bold monitor

git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@5029 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1
Fix a parameter in GammaData class

git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@5030 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1
Adds static html for Tutorial_Exploting_The_Bold_Monitor

git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@5031 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1
Added EEG and SEEG brain visualizers. Enhanced connectivity viewer to show lines with different widths depending on connection strengths.

git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@5032 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1