Added homepage template for private wormqtl
Merge branch 'testing' of github.com:molgenis/molgenis_apps-legacy
Updates for installation of WormQTL
Added some Java example queries
Deleted empty molgenis folder, resolved committed version conflicts in compute and updated build_compute.xml fornew documentation.
First preparations for new plugin to give breeding advice for outbred breedinglines
Class to change statuses of failed jobs
Merge branch 'master' of github.com:georgebyelas/molgenis_apps
removed run log for failed jobs. TODO: moved it to TaskHistory
Merge branch 'master' of github.com:georgebyelas/molgenis_apps
Merge pull request #446 from paraiko/master

AnimalDB changes and fixes + buildscript update
Merge branch 'testing' of git://github.com/molgenis/molgenis_apps-legacy
Merge branch 'testing' of https://github.com/molgenis/molgenis_apps-legacy into testing

Regular pull from blessed testing
Merge pull request #445 from pneerincx/testing

MOLGENIS/compute 4 fixes.
Merge branch 'testing' of git://github.com/molgenis/molgenis_apps-legacy
fixed directory structure for gwas
Merge branch 'master' of github.com:kantale/molgenis_apps
doc reflects inputdir issue
Merge branch 'testing' of https://github.com/molgenis/molgenis_apps-legacy
Merge pull request #448 from kantale/master

This request mainly contains ann addition to the documentation file..