make sure each subroutine ends with return
remove excess whitespace
remove unused module and comments
make default phase -10 for now
code tidy, plus remove TODO comment
remove un-needed attributes / options when runnong pick-block-oligos command
throw exception, do not just die
wrap ensembl slice fetch in try catch block
code tidy
check target start is less than target end for ins / del designs, add test
Merge branch 'master' of github.com:htgt/Design-Creation
output log files for pick-block-oligo command showing more information on oligo pairs
move gap oligo picker log files to sub folder
log information on each oligo block pair, refactor code, add more tests
make log output more specific
use base test class, dynamically create test objects to test against, deletion is no longer the default design method
remove test moose objects, being dynamically created now
update TODO
stop needing to send in design-method option for commands which either do not require that information or it can only be a particular design method
add function to return repeat masked sequence