Classifier code
script to create a PROMModel object
temporarily store the PROMModel in the model area
save PROMModel to pROMModel area
getting PROM working
finish PROM
remove warn
include PROM results in FBAResult
Added parameter to define default namespace
Excluding biomass reactions when loading biochemistry
Fixed problem with recognizing compartments when compound id contains unusual symbols
Updated some output messages to be clearer
Fixed bug
Added and tested option that prints out multiple compound mergers, if undesired, makes it easier to fix a merge
Adding parameter to mergebio allowing detecting of compound mergers
Added option to createEquation that allows one to ignore compartments when wanting to compare reactions
Fixed bug in importing annotation files
Check that bin is defined before checking for existence
Fixing small bugs in commands and adding a few small attributes to db
Merge branch 'promIntegration'

Conflicts:
	lib/ModelSEED/MS/DB/FBAFormulation.pm