bioformats: pom.xml config changed
bioformats: now uses simple logging
Added provisional code for jersey WebServices.
Added the new jersey version. Modified the methods adding the new protocol
Remove unused method from VcfVariantStats
Merge branch 'feature/effect' into develop
Added the old version of Jersey. The code for the new version is commented
Unified the Index & Vfc interfaces
Refactoring & Optimizing code (VariantDBWriter hierarchy)
Merge branch 'develop' of github.com:opencb/java-common-libs into develop

Conflicts:
	bioformats/pom.xml
	pom.xml
Moved the code from sqliteIndex/Stats/Effect to Opencga-storage, and put the code from VariantInfo/Analysis/Control to bioformats
Sam: new structure created
Merge branch 'develop' of github.com:opencb/java-common-libs into develop
Support for studies associated to a VCF (+ PED) file
Added some Unit test. Changeg HashMap to Map
Merge branch 'develop' of github.com:opencb/java-common-libs into develop
Added VcfStats for stats storage
Moved VariantEffect
EVS Annotator. Added initial code to EVS Annotator (only by maf)
Added EVS annottion (only no indels variants)