Provide download and indexing of genomes using Galaxy rsync servers. Generalize galaxy location file creation and add additional indexes
Provide more flexibility in finding Picard jar for indexing by also using CloudBioLinux default location
Merge pull request #65 from brainstorm/master

NCBIRest dbsnp crash on PhiX
Fix for missing genome indexes during manual indexing. Thanks to @brainstorm
Solve similar crash for UCSCGenome...