ENH: Removed DiffusionTensorEstimationCall now that dtiestim writes DTI files as doubles
Merge branches 'DiffusionTensorEstimationReplacedBydtiestim' and 'master'
ENH: MaskComputationWithThresholding does not need float and double images to be quantized anymore
Merge branches 'NoQuantizeNecessaryWithNewVersionOfMaskComputationWithThresholding' and 'master'
ENH: DiffusionTensorEstimation was still searched for even though it is not used anymore
Merge branches 'DiffusionTensorEstimationReplacedBydtiestim' and 'master'
ENH: Modification of the scripts version number
ENH: Replacing RegisterImages by BRAINSFit in 2-Registration
Merge branches 'ReplaceRegisterImagesByBRAINSFitin2-Registration' and 'master'
ENH: Updated default tools directory
Merge branches 'changeDefaultToolsDirectory' and 'master'
BUG: DiffusionTensorEstimation had not been completely removed from the scripts
Merge branches 'DiffusionTensorEstimationReplacedBydtiestim' and 'master'
BUG: missing )
BUG: missing }
ENH: BRAINSFit registration works
BUG: BRAINSFit problems fixed
BUG: Register Images was missing for 6-Warping

It had been removed from the GlobalConfig.bms file since it not used anymore in 2-Registration (was replaced by BRAINSFit) but it is still used in 6-Warping when the inverse h-fields are not used and the transformation is recomputed
Merge branches 'RegisterImagesMissingFor6Warping' and 'master'
BUG: In 3.5 Skullstripping, when processing DWI, the DTI that was not registered was given to be skullstripped.

This has been changed. The DTI that is registered is now given to the config file.