merging from collab

* collab:
  add warning in vignette about NAs with BafLrrSetList function
  Added Human Omni Express Exome 8 v1.1b as a supported chip
  updated version number of pacakge and man pages to reflect these changes
  skeleton for krlmm capability added.  genotype.Illumina() can now take and XY object as input
  update copynumber.Rnw to use BafLrrSetList
  updates to vignettes
  update namespace

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git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/crlmm@79138 bc3139a8-67e5-0310-9ffc-ced21a209358
fix syntax error

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/crlmm@79516 bc3139a8-67e5-0310-9ffc-ced21a209358
fix conflict in description

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/crlmm@80947 bc3139a8-67e5-0310-9ffc-ced21a209358