updated examples code to point out that it works with bleeding-edge currently
Revoke Cython support.
Move dynamically-generated portion of Python setup script into a separate file.
Remove some Cython-support hacks from Python modules.
Fix all compilation warnings in the 'khmer' implementation proper.
Change 'maxErrorRegion' in Jason's aligner to be an unsigned int.
Commence writing of architecture and design document.
Ignore common names for 'virtualenv' directories which may be cohabiting with the sources.
Add overview of khmer arhitecture. Add details on khmer configuration.
Add notes on trace loggers and performance metrics.
Add discussion of thread identity maps, cache managers, and cache manager segments.
Add discussion of reads, read pairs, and read parsers.
Discuss Bloom filters and Python wrapper.
Changed the make file to export CXX, CXXFLAGS, and LIBS fixes #65
Added a check in ktable_get to see if the user passed a pylong. fixes #66
Add doxygen support
sampling
ignore test-data