proteopathogen.geany
removed test/ directory, added spec/ instead , changed application.rb to specify the new test framework, created factory girl spec/factories and some capybara shits in spec/features
added spec/models , created  spec/models/user_spec.rb.  also I should move mzid_files_spec from features to a spec/controllers
added specs for experiment, mzid_file, spectrum_identification and their corresponding factories
created factories -stubs- for most of the models, also created sip and sil specs . Also tdd in action ! -> added  validate search_type  presence true in sip model
factories for most of the models with associations; specs for sil, sir, sii, psa, pep_ev
factories and specs for pd, pdh, pdl, pdp, and more
moved mzid_files_spec to spec/controllers, where it belongs
 controller spec for mzid_files / experiments. tests, and passes, the index lists all mzid files and renders the index view
experiments and mzid_files   model and controller specs
change to spectrum_identification controller spec. Test passes ok
created sir controller spec. still empty
mzidfiles is now nested under experiments and s_i is nested within mzid_files. Also added Searched_modifications in sip table in s_i view
spectrum identifications feature spec tests the si tables display correctly and links to each corresponding sir. test passes
spectrum identification results view
created a spectrum identification item partial to be updated ajaxy in spectrum identification results
trying to make the datatables thing work
datatables now work for spectrum identifications searched modifications partial
spectrum identification results datatable now works too. checkout the application.js manifest lines, make require_tree . work
added some improvements to the sir view