re-worked ReaderToBAM and Fastq, the latter is teste but produces only
one unsorted fastq file.
modified 'fastq' command to adhere to ENA fastq dump rules.
WiP: ReaderToBAM, fixed mate infos, not perfect but works.
ReaderToBAM fixed and cross tested for 10k and 100k.
performance fix in ReaderToBam.
updated lossy model language desription in the README.
added warning for too many mismatches implying wrong reference.