Working in a temporary working folder now
Adding a readme.md to the app template base files folder.

Used to explain the uselessness of those files as an independent resource, and directing users to run the build scripts to generate the true templates.
Fixing up some app template issues.

- Moving the app template files into their own folder, and ensuring that they cannot be mistakenly executed without having first run a build.
- Updating some issues with the app generation script itself, to make sure that pathing is honored relative to the user's CWD.
Merge pull request #303 from khawkins/app_template_cleanup_2

App template cleanup 2