Subparsers bin and preprocess in probin main script
First start with the prerpocess module
Some more arguments for preprocess
Real ino-contigs as test data
Changed contig ids so they match contig-purity files
Wrong file used for the unbalanced test data
Some basic file reading of input files
Merge branch 'merge-read-mapping' of github.com:BinPro/ProBin into merge-read-mapping
Changed one more contig id to fit the new purity-test file
Option to include strain in preprocessing output
Merge with development
Fixed typo linebreak from merge-read-mapping branch
better base_name for files in preprocess
Fixed conflicts in preprocess
Failing test for shape of pseudo_sig
clean up print statements
Merge branch 'development' of github.com:BinPro/ProBin into development
fixed shape of the return from fit_nonzero_parameters
All clustering algorithms should use an epsilon
kmeans uses epsilon as stopping condition