rebuilt the sphinx docs
added sphinx
added mock modules
add project subpackage in RTD
Update Docs/sphinx/pip-requirements.txt
minor cleanup
Merge pull request #87 from SimTk/fix-docs

Fix readthedocs
fix build for python2.6 which doesn't support context manager with statement with tarfile module
addressing #68, should be working
Fix to the rg calculation, issue #88
Merge pull request #89 from SimTk/fix_rg

Fix to the rg calculation, issue #88
Broken version of ipython.parallel
Merge branch 'master' of github.com:SimTk/msmbuilder
Fix ipython.parallel, including a issue in the tests where the ipcluster wasn't stopped. The tests are passing, so this closes #91
Fix incessant printing of the exit status in the TRR reader, which resulted in thousands of lines of 0s being printed
Fix the Extras/GPURMSD setup.py script to use the more efficient pattern from github.com/rmcgibbo/npcuda-example (swig)
added a little numerical leeway in hub score asserts
Fix a small not-closing-the-file bug in io, and make deferred=False the default load scheme (so that the files are not kept open for a long time). Closes #97
Add a test for SaveStructures.py
all_to_all_mfpt calculates only 1 eigenvector for issue #102