Updated the integration bom with ModeShape's dependencies

In addition to the new dependencies that were added, the following changes were made:

- incremented version to 6.0.1-SNAPHOST
- increased the versions of `commons-codec` and `commons-compress` - these are required by Apache Tika 1.3
- reverted Lucene to `3.6.2` - as discussed
- `commons-httpclient` was increased from 3.1 to 4.1.2 which required an artifact change