simple script for grabbing names and original names from phylografter exported JSON.

I was not sure what repo to put this script. The original names are only emitted if you are using a phylografter instance running the code that is currently on the orig-name branch of that repo. Just testing at this point...
dealing with unicode names
scripts for analyzing the name normalization by looking at NexSON files.

These Nexson files are inputs to treemachine, but these
scripts are not really a part of treemachine. They are
placed here because they don't have another home, but
they need to be versioned.
scripts for analyzing the name normalization by looking at NexSON files.

These Nexson files are inputs to treemachine, but these
scripts are not really a part of treemachine. They are
placed here because they don't have another home, but
they need to be versioned.
made script interactive
probably not a necessary change, just demanding that lengths do not differ by much when diagnosing typos
Update README.md
tracking abbreviations that are reused
add ot:inGroupClade functionality to NexsonReader
clean up of metadata code in GraphImporter
stashing some incomplete tweaks to optional scripts
Merge branch 'master' of github.com:/OpenTreeOfLife/treemachine
returning error codes on errors so that the treemachine exits with a non-zero return code when the command fails