Reseeding scheme implmented: pool together restraints
and choose 15% of them to carry forward
Changed the restraint input from being a contact to being distance bound
in that way all distances under 10 will be in the range 10-wide, 10+wide
reduced the force constant as well. And reduced the amount of secondary structure to enforce --in principle, if we have already
secondary structure formed it should be stable, so do not really need that many restraints --upper temperatures keep the minimum needed
Fixed create constraints for creaiting bound constraints: before r2 could be negative, now if it becomes negative, it is 0.
Changed bug d_minus from int to float
Tried to put restraints on hydrophobic and keep a small percent of the previous simulations
Changes to make springs different in reseeding