Changed name of PIDMotor.java to PIDVelocityMotor.java and removed position control from it.
Removed set(double speed) methods from PIDVelocityMotor.java and PIDPositionMotor.java.
Changed the input of PIDVelocityMotor.java to always be in RPM and modified PIDPositionMotor.java to compensate.
Corrected Intake.java and Shooter.java to use new PIDVelocityMotor.java and PIDPositionMotor.java classes.
Added second shooter wheel to Shooter.java.
Added values for second shooter wheel to Shooter.java.
Corrected stop() in Shooter.java and Intake.java to run(0.0) instead of set(0.0) in order to actually stop the motor.
Shooter, shooter tilt, and uptake code is all tested and working on Master Chief (Green Robot) with Logitech Extreme 3D Pro joystick on 2-10-2013.