identifyFileFormat expects IDToolConfig, outputFormat uses FormatVersion

refs #5627, #5653

identifyFileFormat expects %IDCommand% to be the UUID of IDToolConfig,
instead of IDCommand.  This fixes problems where the ReplacementDict wasn't
getting updated when the IDCommand was changed.  #5653

transcoder.outputFormat is now populated with FormatVersion.description,
instead of retyping the description into FPRule.output_file_format. #5627

FPR database creation SQL updated using mysqldump.