Add .gitignore
Using --all to prepare all textfiles
Fix map to call setup
Use line[0] and line[1] in rmsk.py after removing unused data in rmsk.txt
Remove setup from analyze.py
Remove ValueError exception
Remove unnecessary information in rmsk.txt
Replace setup in analyze.py, fix get_args to get all args
Fix chip_seq_list and tfbs_list paths
Fix tf1 name in get_args
Change format of tf1 code and name to correspond to new chip_seq_list.txt format
Fix tf1 code and name assignment
Change format of tf2 code to correspond to new tfbs_list.txt format
Remove file preparation and test args
Remove test print args