radx 20130627

Closes #241
radx 20130702

Closes #251
cdsclient 3.71: New formula

This package allows the querying of astronomical catalogues from the
command line.

The cdsclient package is a set of C and shell routines which can be
built on Unix stations or PCs running Linux, which once compiled allow
to query some databases located at CDS or on mirrors over the network.

Closes #215
snp_sites 1: New forumula

Bioinformatics tool to filter a multi-FASTA alignment file and
output SNP sites in VCF, FASTA, and Phylip formats.
Written in C for speed, and has a low memory overhead.
Closes #253
bamutil 1.0.9

Use the release tarball that includes libStatGen.
ceres-solver 1.5.0: New formula

Closes #144
ceres-solver 1.6.0
mtl 4.0.9338: New formula

Closes #254
mtl 4.0.9373
seqtk 1.0

Add the stable release.
rainbow  2.0.2: RADseq assembler

Efficient tool for clustering and assembling short reads, especially
for RAD.
Closes #255
blat: set depends_on 'libpng'

Closes #257
spades 2.5.0
Update suite-sparse.rb

Updated SHA for tar.gz archive
Closes #258
sickle: Skip the patch for HEAD
celera-assembler 7.0: New formula

Celera Assembler was originally developed at Celera Genomics and is
now an Open Source project at SourceForge. Celera Assembler was
developed specifically to enable the assembly of the human genome
through the Whole Genome Shotgun (WGS) method.
allpaths-lg 44837: New formula

De novo genome sequence assembler
allpaths-lg 47032
allpaths-lg: Fix syntax error

This language feature requires Ruby 2.0.
syntax error, unexpected tSTRING_BEG, expecting tAMPER
"--prefix=#{prefix}"
Closes #262
hyphy 2.2: new build options

Closes #261